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A Natural History Study Seeks to Understand the Clinical, Genomic, Pharmacological, Laboratory, and Dietary Determinates of Pyrimidine and Purine Metabolism Disorders

A Natural History Study Seeks to Understand the Clinical, Genomic, Pharmacological, Laboratory, and Dietary Determinates of Pyrimidine and Purine Metabolism Disorders

Recruiting
1 years and older
All
Phase N/A

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Overview

Background

Pyrimidine and purine metabolism disorders (DPPMs) affect how the body metabolizes chemicals called pyrimidines and purines. DPPMs can cause dysfunctions throughout the body, especially in the brain, blood, kidneys, and immune system. People with DPPMs might have no symptoms, mild symptoms, or they may have severe, chronic symptoms, that can be fatal. DPPMs are not well understood, and researchers want to learn more about what causes them and how to treat them.

Objective

To learn more about factors that affect DPPMs by comparing test results from affected, uaffected family members, and healthy people.

Eligibility

Three types of participants are needed: people aged 1 month and older with DPPMs; their family members who do not have DPPMs; and healthy volunteers.

Design

Participants with DPPMs will come to the clinic once a year; some may be asked to come more often. At each visit, all affected participants will have a physical exam and give samples of blood, urine, saliva, and stool. Depending on their symptoms, they may also have other procedures, such as:

Swabs of their skin and inside the mouth.

Tests of their heart, kidney, brain, and nerve function.

Questionnaires about what they eat.

Dental exams, and exams of their hearing and vision.

Tests of their learning ability.

Monitoring of their physical activity.

Imaging scans.

Photographs of their face and body.

These tests may be spread over up to 7 days. Affected participants may remain in the study indefinitely if they wish to.

Healthy volunteers and family members will have 1 study visit. They will have a physical exam and may be asked to give blood, urine, saliva, and stool samples.

Description

Study Description:

This study will explore the natural history and mechanisms of novel or known but incompletely characterized disorders of pyrimidine and purine metabolism (DPPMs). Eligible participants will be ascertained by identifying biochemical abnormalities in the levels of purines, pyrimidines and related compounds in body fluids, abnormal activity of enzymes, and/or identifying pathogenic variants in genes linked to purines and pyrimidine metabolism. We will collect participants DNA for genetic and genomic analyses, body fluids for biochemical analysis, blood and tissue samples for enzyme analysis, gastrointestinal samples for microbiome analysis. Some participants may undergo skin biopsy. Study subjects will be offered medical, laboratory, and imaging studies at the NIH Clinical Research Center consistent with the standards of care. Collected data will be analyzed to improve understanding of the natural history, develop statistical prediction models, identify and validate novel biomarkers.

Objectives

Primary Objective: To describe features of novel and poorly characterized DPPMs.

Secondary Objectives: To identify genomic, clinical, pharmacological, laboratory, and dietary factors associated with variable outcomes in subjects affected by DPPMs.

Endpoints

Primary Endpoint: Identify genomic variants, laboratory parameters, image findings, microbiome variables, nutritional and medication history of DPPMs.

Secondary Endpoints: Identify disease parameters associated with variable clinical outcomes (e.g., frequency of hospitalizations, survival, quality of life, function).

Eligibility

  • INCLUSION CRITERIA:
        There are three populations that will be included in this study: subjects with known DPPM,
        family members of study subjects, and healthy controls.
        In order to be eligible to participate in this study as a subject with a known DPPM an
        individual must meet all following criteria:
          -  At least one month of age;
               -  A medical history that, based on the preponderance of clinical, laboratory,
                  biochemical, and/or genomic evidence is consistent with DPPMs;
               -  Clinical findings that can be used to suspect disorders of purine and pyrimidine
                  metabolism will include, but not be limited to the presence of congenital
                  malformations, neurological, behavioral, immunological, rheumatological,
                  hematological, renal involvement; gout; and recurrent rhabdomyolysis in one or
                  more family members.
               -  Laboratory findings may include but not limited to elevated CPK (recurrent
                  rhabdomyolysis); neutropenia, lymphopenia, anemia, thrombocytopenia; and
                  immunodeficiency.
               -  Biochemical evidence may encompass but not limited to persistent laboratory
                  abnormalities in blood and urinary urate (a terminal product of purine
                  degradation); blood and urinary beta-alanine (a terminal product of pyrimidine
                  degradation); characteristic findings on plasma amino acid profiles (elevated
                  plasma aspartate and glycine); elevated orotic acid on the urine organic acid
                  assay; presence of urate crystals in urine; abnormal findings on the purine and
                  pyrimidine panels (e.g. plasma and urine purines & pyrimidines biochemical panels
                  at Mayo, PUPYP and PUPYU).
               -  Genomic evidence may include the presence of pathogenic and likely pathogenic
                  variants in genes known or plausibly linked to the pathways of the de novo
                  synthesis, degradation, and salvage of purines & pyrimidines. Participants with
                  variants of unknown significance in the said genes may be invited to participate
                  in the protocol, if they have clinical, laboratory and biochemical evidence
                  consistent with DPPMs.
          -  Have a primary metabolic or genetic physician, or primary care provider; and
          -  Ability of the subject, parent/s (in the case of children), or a Legally Authorized
             Representative (LAR) to understand and the willingness to sign a written informed
             consent document.
        In order to be eligible to participate in this study as an unaffected family member of a
        subject with known DPPM, an individual must meet all the following criteria:
          -  At least one month of age;
          -  Relationship either by blood or marriage, to an individual enrolled or about to be
             enrolled in the study with known DPPM;
          -  Likelihood, in the expert opinion of the study team, that analysis of a sample from
             the individual would advance genetic or functional analysis of the affected relative s
             possible condition; and
          -  Ability of the subject, parent/s (in the case of children), or an LAR to understand
             and the willingness to sign a written informed consent document.
          -  If during the consenting/assenting procedure, review of medical and family history and
             physical exam, clinical suspicion arises that a family member has symptoms of DPPMs,
             additional review and/or studies may be recommended to clarify the clinical status.
          -  Participants must have a routine clinical care team outside of NIH to enroll in this
             study.
        In order to be eligible to participate in this study as an unrelated healthy volunteer, an
        individual must meet all the following criteria:
          -  No personal or family history of DPPMs;
          -  At least one month old;
          -  No symptoms of DPPMs;
          -  Likelihood, in the expert opinion of the study team, that a sample from the individual
             would advance the functional analysis of the DPPM under study;
          -  And ability of the subject, parent/s (in the case of children), or an LAR to
             understand and the willingness to sign a written informed consent document.
          -  Participants must have a routine clinical care team outside of NIH to enroll in this
             study.
        EXCLUSION CRITERIA:
        Individuals meeting the following exclusion criteria are not eligible for the study:
          -  Unrelated volunteers who are unaffected with DPPM but have intellectual disability due
             to other causes, such that they cannot provide informed consent without a
             guardian/LAR, will not be enrolled in this study. Affected individuals and family
             member(s) of individuals with DPPM can participate in the study when appropriate
             informed consent is obtained (with aide of parents/guardian/LAR/bioethics review when
             necessary).
          -  Intercurrent or chronic conditions which in the opinion of the investigators, can then
             interfere with the interpretation of research studies (e.g. ongoing cancer treatment
             resulting in bone marrow suppression in a patient with DPPM also presenting with bone
             marrow suppression).
          -  Pregnant participants as unaffected family members or as unrelated healthy volunteers
             are not able to join the protocol during the pregnancy.
          -  Individuals without a routine clinical care team outside of the NIH cannot enroll in
             this study. We will ask the participants for the name of clinical care team prior to
             enrollment.

Study details
    AMPD3
    OMIM*102772
    AMP Deaminase Deficiency
    AK1
    OMIM *103000
    Adenylate Kinase Deficiency
    AMPD1
    OMIM *102770
    Myopathy Due to Myoadenylate Deaminase Deficiency
    TPMT
    OMIM *187680
    Thoipurines
    Poor Metabolism of
    IMPDH1
    OMIM *146690
    Retinitis Pigmentosa Type 10
    Leber Congenital Amauriosis Type 11
    APRT
    OMIM *102600
    Adenine Phosphoribosyltransferase Deficiency
    HPRT1
    OMIM *308000 Lesch-Nyhan Disease
    XDH
    OMIM *607633
    Xanthinuria Type 1
    SLC2A9
    OMIM *606142 Hypouricemia
    SLC22A12
    OMIM *607096 Hypouricemia
    PRPS1 Def
    OMIM *311850
    Arts Syndrome; Charcot-Marie-Tooth Disease
    PRPS1 SA
    OMIM *311850 Gout
    PRPS-related Phosphoribosylpyrophosphate Synthetase Superactivity
    AMPD2
    OMIM *102771
    Spastic Paraplegia 63; Pontocerebellar Hypoplasia
    ITPA
    OMIM *147520
    Inosine Triphosphatase Deficiency; Developmental and Epileptic Encephalopathy 35
    ADSL
    OMIM *608222
    Adenylosuccinate Lyase Deficiency
    PNP
    OMIM *164050
    Nucleoside Phosphorylase Deficiency
    ADA2
    OMIM *607575
    Sneddon Syndrome; VAIHS
    CAD
    *1140120
    Developmental and Epileptic Encephalopathy
    UPB1
    OMIM *606673
    Beta-ureidopropionase Deficiency
    DPYS
    OMIM *613326
    Dihydropyrimidinase Deficiency
    DPYD
    OMIM *274270
    Dihydropyrimidine Dehydrogenase Deficiency
    DHODH
    OMIM *126064
    Miller Syndrome (Postaxial Acrofacial Dysostosis)
    UMPS
    OMIM *613891
    Orotic Aciduria
    NT5C3A<TAB>
    OMIM *606224
    Anemia
    Hemolytic
    Due to UMPH1 Deficiency
    UNG
    OMIM *191525
    Hyper-IgM Syndrome 5
    AICDA
    OMIM *605257
    Immunodeficiency With Hyper-IgM
    Type 2; HIGM2
    Purine-Pyrimidine Metabolism
    Metabolic Disease

NCT06092346

National Human Genome Research Institute (NHGRI)

16 April 2024

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